SMTL ID : 2wxu.1

Clostridium perfringens alpha-toxin strain NCTC8237 mutant T74I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

7 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: H.46, E.47 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.46, A:E.47, H2O.3, H2O.3, H2O.3 CD.2: 5 residues within 4Å: Chain A: D.56, H.68, H.126, D.130 Ligands: ZN.5 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:H.68, A:H.126, A:D.130, H2O.5, H2O.16 CD.3: 3 residues within 4Å: Chain A: H.136, H.148, E.152 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.136, A:H.148, A:E.152, H2O.7, H2O.8 CD.4: 2 residues within 4Å: Chain A: C.169, E.173 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.169, A:E.173, A:E.173 CD.6: 2 residues within 4Å: Chain A: H.241, E.245 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.241, A:E.245, H2O.11, H2O.11, H2O.11 CD.8: 2 residues within 4Å: Chain A: H.212, D.216 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.212, A:D.216, H2O.10, H2O.10, H2O.11 CD.9: 1 residues within 4Å: Chain A: H.207 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.207, H2O.10

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: W.1, H.11, H.126, D.130 Ligands: CD.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.1, A:H.11, A:D.130, H2O.16

5 x CA: CALCIUM ION(Non-covalent)

CA.7: 2 residues within 4Å: Chain A: D.273, N.297 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.273, H2O.12, H2O.14 CA.10: 4 residues within 4Å: Chain A: D.269, G.271, D.336, A.337 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.269, A:G.271, A:D.336, A:A.337, H2O.12, H2O.15 CA.11: 4 residues within 4Å: Chain A: D.293, N.294, G.296, D.298 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.293, A:N.294, A:G.296, A:D.298, H2O.13 CA.12: 2 residues within 4Å: Chain A: E.291, D.293 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.291, A:D.293, H2O.13, H2O.13 CA.13: 1 residues within 4Å: Chain A: D.269 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vachieri, S.G. et al., Comparison of a Nontoxic Variant of Clostridium Perfringens [Alpha]-Toxin with the Toxic Wild-Type Strain. Acta Crystallogr.,Sect.D (2010)

Release Date

2009-11-17

Peptides

PHOSPHOLIPASE C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOLIPASE C

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