SMTL ID : 2x02.1

CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10 AT 1.35 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.49, S.97, K.187, T.188, G.189, F.190, R.232 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.49, A:S.97, A:T.188, A:G.189 Water bridges: A:V.96, A:S.97, A:T.188, A:F.190, A:F.190, A:R.232 Salt bridges: A:K.187, A:R.232

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain A: S.197, N.198, P.199, D.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.222 Water bridges: A:N.20, A:D.222 PG4.6: 6 residues within 4Å: Chain A: H.69, V.71 Chain B: Y.156, L.157, T.212, V.214 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.156

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: Y.45, L.46, R.142, P.199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.46 DMS.4: 7 residues within 4Å: Chain A: N.11, F.14, V.19, N.20, G.21, N.36, D.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.21 Water bridges: A:R.40 DMS.5: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.43 DMS.7: 5 residues within 4Å: Chain B: Y.45, L.46, R.142, S.191, V.201 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.46

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 8 residues within 4Å: Chain B: N.11, F.14, V.19, N.20, G.21, N.36, D.37, R.40 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:V.19, B:N.20, B:G.21, B:D.37, B:D.37 Water bridges: B:V.19, B:R.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vercheval, L. et al., Impact of the Carboxylated Lysine on the Acylation and Deacylation Step in Class D Beta-Lactamase. To be Published

Release Date

2010-12-08

Peptides

BETA-LACTAMASE OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA-LACTAMASE OXA-10

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