SMTL ID : 4wz5.1 (1 other biounit)

Crystal structure of P. aeruginosa OXA10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.142 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.142 SO4.2: 4 residues within 4Å: Chain A: T.62, R.113, K.116, Y.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.117 Salt bridges: A:R.113, A:K.116 SO4.4: 7 residues within 4Å: Chain B: S.49, S.97, K.187, T.188, G.189, F.190, R.232 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.49, B:S.49, B:S.97, B:T.188, B:T.188 Water bridges: B:K.187, B:F.190, B:F.190 Salt bridges: B:K.187, B:R.232 SO4.5: 5 residues within 4Å: Chain B: Y.45, L.46, R.142, S.191, V.201 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.46, B:S.191 Salt bridges: B:R.142 SO4.6: 3 residues within 4Å: Chain B: A.162, S.163, K.164 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.164, A:E.165, A:E.165 Water bridges: B:A.162, B:E.165 SO4.7: 8 residues within 4Å: Chain A: T.89, R.91 Chain B: P.180, E.181, Y.182, L.183, E.209, E.211 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.183, B:E.211 Water bridges: A:G.92

1 x 3VU: {(3R)-6-[(3-amino-1,2,4-thiadiazol-5-yl)oxy]-1-hydroxy-4,5-dimethyl-1,3-dihydro-2,1-benzoxaborol-3-yl}acetic acid(Covalent)

3VU.3: 13 residues within 4Å: Chain A: A.48, S.49, K.52, M.81, W.84, S.97, V.99, L.137, E.138, G.189, F.190, S.191, R.232 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.84, A:W.84, A:V.99, A:L.137 Hydrogen bonds: A:S.49, A:S.97, A:S.97, A:E.138, A:F.190, A:F.190 Water bridges: A:R.232, A:R.232 Salt bridges: A:R.232

1 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.8: 6 residues within 4Å: Chain B: S.49, K.52, V.99, F.102, W.136, L.137 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKinney, D.C. et al., 4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors. Acs Infect Dis. (2015)

Release Date

2015-08-05

Peptides

Beta-lactamase OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Beta-lactamase OXA-10

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