SMTL ID : 2x0l.1

Crystal structure of a neuro-specific splicing variant of human histone lysine demethylase LSD1.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: G.163, S.164, G.165, V.166, S.167, L.185, E.186, A.187, R.188, G.192, G.193, R.194, L.207, G.208, A.209, M.210, V.211, T.470, A.471, V.472, T.506, L.507, P.508, V.519, L.541, K.543, W.638, S.642, Y.643, G.682, E.683, A.691, T.692, V.693, A.696 Chain C: M.4 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.541, A:Y.643 Hydrogen bonds: A:G.163, A:S.164, A:G.165, A:S.167, A:S.167, A:A.187, A:R.188, A:G.192, A:R.194, A:A.209, A:M.210, A:V.211, A:V.211, A:V.472, A:V.472, A:E.683, A:A.691, A:V.693 Salt bridges: A:R.194, A:R.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zibetti, C. et al., Alternative Splicing of the Histone Demethylase Lsd1/Kdm1 Contributes to the Modulation of Neurite Morphogenesis in the Mammalian Nervous System. J.Neurosci. (2010)

Release Date

2010-03-02

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1: A
REST COREPRESSOR 1: B
HISTONE H3 PEPTIDE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1

REST COREPRESSOR 1

HISTONE H3 PEPTIDE

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