SMTL ID : 2x5i.2 (3 other biounits)

Crystal structure echovirus 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 14 residues within 4Å: Chain A: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.95, A:I.95, A:Y.146, A:Y.146, A:Y.146, A:I.183, A:I.183, A:Y.192, A:Y.192, A:F.240 Hydrogen bonds: A:S.193, A:N.214 DAO.2: 14 residues within 4Å: Chain E: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:I.95, E:I.95, E:Y.146, E:Y.146, E:Y.146, E:I.183, E:I.183, E:Y.192, E:Y.192, E:F.240 Hydrogen bonds: E:S.193, E:Y.210, E:N.214 DAO.3: 14 residues within 4Å: Chain I: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 12 PLIP interactions: 12 interactions with chain I Hydrophobic interactions: I:I.95, I:I.95, I:Y.146, I:Y.146, I:Y.146, I:I.183, I:I.183, I:Y.192, I:Y.192, I:F.240 Hydrogen bonds: I:S.193, I:N.214 DAO.4: 14 residues within 4Å: Chain M: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:I.95, M:I.95, M:Y.146, M:Y.146, M:Y.146, M:I.183, M:I.183, M:Y.192, M:Y.192, M:F.240 Hydrogen bonds: M:S.193, M:N.214 DAO.5: 14 residues within 4Å: Chain Q: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 12 PLIP interactions: 12 interactions with chain Q Hydrophobic interactions: Q:I.95, Q:I.95, Q:Y.146, Q:Y.146, Q:Y.146, Q:I.183, Q:I.183, Q:Y.192, Q:Y.192, Q:F.240 Hydrogen bonds: Q:S.193, Q:N.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plevka, P. et al., Interaction of Decay-Accelerating Factor with Echovirus 7. J.Virol. (2010)

Release Date

2010-12-22

Peptides

VP1: AEIMQ
VP2: BFJNR
VP3: CGKOS
VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

VP1

VP2

VP3

VP4

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