SMTL ID : 2x6i.1

THE CRYSTAL STRUCTURE OF THE DROSOPHILA CLASS III PI3-KINASE VPS34 IN COMPLEX WITH PIK-90

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

2 x 090: N-(2,3-DIHYDRO-7,8-DIMETHOXYIMIDAZO[1,2-C] QUINAZOLIN-5-YL)NICOTINAMIDE(Non-covalent)

090.1: 15 residues within 4Å: Chain A: F.420, K.421, I.443, K.445, D.453, Y.479, L.491, Q.492, Y.493, V.494, S.496, E.501, L.559, I.569, D.570 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.493, A:L.559, A:I.569, A:I.569, A:D.570 Hydrogen bonds: A:K.421, A:V.494, A:V.494, A:D.570 pi-Stacking: A:Y.479 090.2: 13 residues within 4Å: Chain B: I.443, K.445, D.453, Y.479, L.491, Q.492, Y.493, V.494, S.496, T.498, E.501, I.569, D.570 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:K.445, B:L.491, B:I.569 Hydrogen bonds: B:D.453, B:V.494, B:V.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, S. et al., Shaping Development of Autophagy Inhibitors with the Structure of the Lipid Kinase Vps34. Science (2010)

Release Date

2010-04-07

Peptides

PHOSPHOTIDYLINOSITOL 3 KINASE 59F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PHOSPHOTIDYLINOSITOL 3 KINASE 59F

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