- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 16 residues within 4Å:- Chain A: T.128, N.216, S.227, M.228, A.229, V.231, H.234, L.247, F.248, S.251, F.254, R.256, F.290, L.315, Y.319
- Ligands: BMA.3
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:T.128, A:N.216, A:A.229, A:H.234, A:F.248, A:S.251, A:Y.319, A:Y.319
- Water bridges: A:R.256, A:R.256
- Salt bridges: A:R.256, A:R.256
- pi-Stacking: A:F.248, A:F.248
ADP.5: 15 residues within 4Å:- Chain B: T.128, N.216, S.227, M.228, A.229, V.231, H.234, K.246, L.247, F.248, S.251, R.256, F.290, L.315, Y.319
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:N.216, B:M.228, B:A.229, B:H.234, B:F.248, B:S.251, B:Y.319, B:Y.319
- Salt bridges: B:R.256, B:R.256
- pi-Stacking: B:F.248, B:F.248
ADP.7: 16 residues within 4Å:- Chain C: T.128, N.216, S.227, M.228, A.229, V.231, H.234, L.247, F.248, S.251, F.254, R.256, F.290, L.315, Y.319
- Ligands: BMA.8
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:N.216, C:N.216, C:A.229, C:H.234, C:F.248, C:S.251, C:S.251, C:Y.319
- Salt bridges: C:R.256, C:R.256
- pi-Stacking: C:F.248
ADP.10: 16 residues within 4Å:- Chain D: T.128, N.216, S.227, M.228, A.229, V.231, H.234, L.247, F.248, S.251, F.254, R.256, F.290, L.315, Y.319
- Ligands: BMA.11
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:T.128, D:N.216, D:A.229, D:F.248, D:S.251, D:S.251, D:Y.319
- Salt bridges: D:R.256, D:R.256
- pi-Stacking: D:F.248, D:F.248
ADP.13: 16 residues within 4Å:- Chain E: T.128, N.216, S.227, M.228, A.229, V.231, H.234, L.247, F.248, S.251, F.254, R.256, F.290, L.315, Y.319
- Ligands: BMA.14
12 PLIP interactions:12 interactions with chain E- Hydrogen bonds: E:T.128, E:N.216, E:A.229, E:F.248, E:S.251, E:S.251, E:Y.319
- Water bridges: E:R.256
- Salt bridges: E:R.256, E:R.256
- pi-Stacking: E:F.248, E:F.248
- 4 x BMA: beta-D-mannopyranose(Non-covalent)
BMA.3: 8 residues within 4Å:- Chain A: S.126, T.128, S.163, F.187, K.225, M.228
- Ligands: NAP.1, ADP.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.163, A:K.225, A:M.228
BMA.8: 9 residues within 4Å:- Chain C: S.126, T.128, S.163, A.165, F.187, K.225, M.228
- Ligands: NAP.6, ADP.7
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.163, C:S.163, C:K.225, C:M.228
BMA.11: 8 residues within 4Å:- Chain D: S.126, T.128, S.163, F.187, K.225, M.228
- Ligands: NAP.9, ADP.10
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.163, D:K.225, D:M.228
BMA.14: 9 residues within 4Å:- Chain E: S.126, T.128, S.163, F.187, F.215, K.225, M.228
- Ligands: NAP.12, ADP.13
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:S.163, E:K.225
- Water bridges: E:Q.320
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kowatz, T. et al., The Crystal Structure of the Y140F Mutant of Adp-L-Glycero-D-Manno-Heptose 6-Epimerase Bound to Adp-Beta-D-Mannose Suggests a One Base Mechanism. Protein Sci. (2010)
- Release Date
- 2010-03-16
- Peptides
- ADP-L-GLYCERO-D-MANNO-HEPTOSE-6-EPIMERASE: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x BMA: beta-D-mannopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kowatz, T. et al., The Crystal Structure of the Y140F Mutant of Adp-L-Glycero-D-Manno-Heptose 6-Epimerase Bound to Adp-Beta-D-Mannose Suggests a One Base Mechanism. Protein Sci. (2010)
- Release Date
- 2010-03-16
- Peptides
- ADP-L-GLYCERO-D-MANNO-HEPTOSE-6-EPIMERASE: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E