SMTL ID : 2x8o.1

Crystal Structure of CbpF in complex with Atropine by soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

6 x CHT: CHOLINE ION(Non-covalent)

CHT.1: 5 residues within 4Å: Chain A: W.214, W.221, Y.243, M.251, N.269 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.214, A:W.214, A:W.221, A:W.221 CHT.7: 4 residues within 4Å: Chain A: W.235, W.242, Y.263, S.289 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.235, A:W.235, A:W.242, A:W.242 CHT.8: 4 residues within 4Å: Chain A: W.276, W.283, Y.301, W.309 5 PLIP interactions: 5 interactions with chain A pi-Cation interactions: A:W.276, A:W.276, A:W.283, A:W.283, A:W.309 CHT.11: 4 residues within 4Å: Chain A: W.163, W.181, M.210, N.228 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.163, A:W.163, A:W.181, A:W.181 CHT.12: 6 residues within 4Å: Chain A: W.130, W.137, Y.182, M.190, S.207 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.130, A:W.130, A:W.137, A:W.137 CHT.13: 4 residues within 4Å: Chain A: W.255, W.262, L.292, N.306 4 PLIP interactions: 4 interactions with chain A pi-Cation interactions: A:W.255, A:W.255, A:W.262, A:W.262

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Y.244, R.246, S.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.244, A:S.247, A:S.247 Water bridges: A:S.248 Salt bridges: A:R.246

2 x OIN: (1R,5S)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL (2R)-3-HYDROXY-2-PHENYLPROPANOATE(Non-covalent)

OIN.3: 5 residues within 4Å: Chain A: K.10, D.11, R.13, Y.15, E.41 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.11 Salt bridges: A:E.41 OIN.6: 5 residues within 4Å: Chain A: W.194, W.201, Y.222, M.231, S.248 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.194, A:W.194, A:W.194, A:W.201, A:W.201, A:W.201, A:Y.222 Water bridges: A:Y.222

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: Y.203, G.205, S.206, S.207, K.215 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.206, A:S.207, A:S.207, A:K.215, A:K.215 GOL.5: 2 residues within 4Å: Chain A: W.137 Ligands: CHT.12 No protein-ligand interaction detected (PLIP) GOL.9: 4 residues within 4Å: Chain A: K.14, Y.34, M.42, D.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.81 Water bridges: A:D.30, A:D.30 GOL.10: 2 residues within 4Å: Chain A: K.196, W.201 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.196 Water bridges: A:W.201, A:S.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva-Martin, N. et al., Crystal Structure of Cbpf in Complex with Atropine by Soaking. To be Published

Release Date

2011-04-06

Peptides

CHOLINE-BINDING PROTEIN F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHOLINE-BINDING PROTEIN F

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