SMTL ID : 2xah.1

CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX WITH (+)-TRANS-2-PHENYLCYCLOPROPYL-1-AMINE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-oligomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: G.285, G.287, V.288, S.289, L.307, E.308, A.309, R.310, G.314, G.315, R.316, V.317, L.329, G.330, A.331, M.332, V.333, T.588, A.589, V.590, T.624, L.625, P.626, V.637, W.751, W.756, S.760, Y.761, G.800, E.801, A.809, T.810, V.811, A.814 Ligands: 3PL.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.761 Hydrogen bonds: A:G.287, A:S.289, A:S.289, A:A.309, A:R.310, A:G.314, A:R.316, A:R.316, A:A.331, A:M.332, A:V.333, A:V.333, A:V.590, A:V.590, A:E.801, A:A.809, A:V.811 Salt bridges: A:R.316, A:R.316

1 x 3PL: 3-PHENYLPROPANAL(Non-covalent)

3PL.2: 7 residues within 4Å: Chain A: M.332, V.333, F.538, A.539, W.695, Y.761 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.333, A:F.538, A:W.695, A:Y.761

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Binda, C. et al., Biochemical, Structural, and Biological Evaluation of Tranylcypromine Derivatives as Inhibitors of Histone Demethylases Lsd1 and Lsd2. J.Am.Chem.Soc. (2010)

Release Date

2010-05-05

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1

REST COREPRESSOR 1

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