SMTL ID : 2xaq.1

Crystal structure of LSD1-CoREST in complex with a tranylcypromine derivative (MC2584, 13b)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: G.285, S.286, G.287, V.288, S.289, L.307, E.308, A.309, R.310, G.314, G.315, R.316, L.329, G.330, A.331, M.332, V.333, T.588, A.589, V.590, L.625, P.626, W.751, W.756, S.760, Y.761, G.800, E.801, A.809, T.810, V.811, A.814 Ligands: M84.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.761 Hydrogen bonds: A:S.286, A:G.287, A:S.289, A:A.309, A:R.310, A:R.310, A:G.314, A:R.316, A:R.316, A:M.332, A:V.333, A:V.333, A:V.590, A:V.590, A:E.801, A:A.809, A:V.811 Salt bridges: A:R.316, A:R.316

1 x M84: 3-{4-[(PHENYLCARBONYL)AMINO]PHENYL}PROPANOIC ACID(Non-covalent)

M84.2: 9 residues within 4Å: Chain A: T.335, D.555, D.556, E.559, K.661, Y.761, A.809, T.810 Ligands: FAD.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.559, A:T.810 Hydrogen bonds: A:K.661

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Binda, C. et al., Biochemical, Structural, and Biological Evaluation of Tranylcypromine Derivatives as Inhibitors of Histone Demethylases Lsd1 and Lsd2. J.Am.Chem.Soc. (2010)

Release Date

2010-05-05

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1

REST COREPRESSOR 1

Related Entries With Identical Sequence