SMTL ID : 2xbo.2 (3 other biounits)

Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose

GLC-GAL-SIA.1: 6 residues within 4Å: Chain A: A.64, Q.65 Chain Q: A.118, W.119, Q.120, R.129 4 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain A Hydrogen bonds: Q:A.118, Q:Q.120, A:Q.65 Salt bridges: Q:R.129 GLC-GAL-SIA.2: 6 residues within 4Å: Chain A: A.118, W.119, Q.120, R.129 Chain E: A.64, Q.65 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain A Hydrogen bonds: E:Q.65, A:A.118, A:Q.120 Salt bridges: A:R.129 GLC-GAL-SIA.3: 6 residues within 4Å: Chain E: A.118, W.119, Q.120, R.129 Chain I: A.64, Q.65 4 PLIP interactions: 1 interactions with chain I, 3 interactions with chain E Hydrogen bonds: I:Q.65, E:A.118, E:Q.120 Salt bridges: E:R.129 GLC-GAL-SIA.4: 6 residues within 4Å: Chain I: A.118, W.119, Q.120, R.129 Chain M: A.64, Q.65 4 PLIP interactions: 1 interactions with chain M, 3 interactions with chain I Hydrogen bonds: M:Q.65, I:A.118, I:Q.120 Salt bridges: I:R.129 GLC-GAL-SIA.5: 6 residues within 4Å: Chain M: A.118, W.119, Q.120, R.129 Chain Q: A.64, Q.65 4 PLIP interactions: 3 interactions with chain M, 1 interactions with chain Q Hydrogen bonds: M:A.118, M:Q.120, Q:Q.65 Salt bridges: M:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fry, E.E. et al., The Crystal Structure of Equine Rhinitis a Virus in Complex with its Sialic Acid Receptor. J.Gen.Virol. (2010)

Release Date

2010-09-22

Peptides

P1: AEIMQ
P1: BFJNR
P1: CGKOS
P1: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

P1

P1

P1

P1

Related Entries With Identical Sequence