SMTL ID : 2xbo.3 (3 other biounits)

Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose

GLC-GAL-SIA.1: 2 residues within 4Å: Chain A: A.64, Q.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.65 GLC-GAL-SIA.2: 6 residues within 4Å: Chain A: A.118, W.119, Q.120, R.129 Chain E: A.64, Q.65 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:A.118, A:Q.120, E:Q.65 Salt bridges: A:R.129 GLC-GAL-SIA.3: 6 residues within 4Å: Chain I: A.64, Q.65 Chain M: A.118, W.119, Q.120, R.129 4 PLIP interactions: 3 interactions with chain M, 1 interactions with chain I Hydrogen bonds: M:A.118, M:Q.120, I:Q.65 Salt bridges: M:R.129 GLC-GAL-SIA.4: 2 residues within 4Å: Chain M: A.64, Q.65 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:Q.65 GLC-GAL-SIA.5: 2 residues within 4Å: Chain Q: A.64, Q.65 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:Q.65 GLC-GAL-SIA.6: 6 residues within 4Å: Chain Q: A.118, W.119, Q.120, R.129 Chain U: A.64, Q.65 4 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain U Hydrogen bonds: Q:A.118, Q:Q.120, U:Q.65 Salt bridges: Q:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fry, E.E. et al., The Crystal Structure of Equine Rhinitis a Virus in Complex with its Sialic Acid Receptor. J.Gen.Virol. (2010)

Release Date

2010-09-22

Peptides

P1: AEIMQU
P1: BFJNRV
P1: CGKOSW
P1: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

P1

P1

P1

P1

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