SMTL ID : 2xib.4 (3 other biounits)

CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH DEOXYFUCONOJIRIMYCIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DFU: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL(Non-covalent)

DFU.1: 10 residues within 4Å: Chain A: H.35, E.56, W.57, H.104, H.105, Y.147, D.198, R.231, E.257, W.285 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.285 Hydrogen bonds: A:W.57, A:H.104, A:H.105, A:Y.147, A:D.198, A:D.198, A:R.231

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: W.201, R.231, R.240, H.241 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.231, A:R.240, A:H.241

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: D.304, Y.365, N.380 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.304, A:N.380

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: E.301, D.304, F.379, N.380 Ligands: TRS.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammerts Van Bueren, A. et al., Structural and Thermodynamic Analyses of Alpha-L-Fucosidase Inhibitors. Chembiochem (2010)

Release Date

2010-07-21

Peptides

ALPHA-L-FUCOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

ALPHA-L-FUCOSIDASE

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