- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 13 residues within 4Å:- Chain A: R.163, D.164, T.166, N.173, F.373, Q.472, R.475
- Chain B: K.381, R.475, Y.476
- Ligands: MG.4, ATP.7, MG.9
19 PLIP interactions:6 interactions with chain B, 13 interactions with chain A- Hydrogen bonds: B:R.475, B:Y.476, B:Y.476, A:R.163, A:R.163, A:N.173, A:N.173, A:Q.472
- Salt bridges: B:K.381, B:K.381, B:K.381, A:R.163, A:R.163, A:R.163, A:R.475
- Water bridges: A:D.164, A:I.171, A:Y.476
- pi-Stacking: A:F.373
ATP.7: 13 residues within 4Å:- Chain A: K.381, R.475, Y.476
- Chain B: R.163, D.164, T.166, N.173, F.373, Q.472, R.475
- Ligands: ATP.2, MG.4, MG.9
18 PLIP interactions:13 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:R.163, B:R.163, B:N.173, B:N.173, B:Q.472, A:R.475, A:Y.476
- Water bridges: B:D.164, B:I.171, B:Y.476
- Salt bridges: B:R.163, B:R.163, B:R.163, B:R.475, A:K.381, A:K.381, A:K.381
- pi-Stacking: B:F.373
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 9 residues within 4Å:- Chain A: Q.299, F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.341, A:G.343
GOL.8: 9 residues within 4Å:- Chain B: Q.299, F.302, D.303, I.305, L.340, Q.341, H.342, G.343, I.344
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.341, B:H.342, B:G.343
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain B: Y.476
- Ligands: ATP.2, ATP.7, MG.9
No protein-ligand interaction detected (PLIP)MG.5: 4 residues within 4Å:- Chain A: N.71, D.73, D.370
- Ligands: U5P.1
5 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: A:D.73, A:D.370, U5P.1, H2O.6, H2O.6
MG.9: 4 residues within 4Å:- Chain A: Y.476
- Ligands: ATP.2, MG.4, ATP.7
No protein-ligand interaction detected (PLIP)MG.10: 4 residues within 4Å:- Chain B: N.71, D.73, D.370
- Ligands: U5P.6
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: B:D.73, B:D.370, U5P.6, H2O.13, H2O.13
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-03-16
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-03-16
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A