- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x CU: COPPER (II) ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: A.162, P.163, K.164
- Chain I: G.77
Ligand excluded by PLIPCL.7: 4 residues within 4Å:- Chain D: A.162, P.163, K.164
- Chain K: G.77
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain F: R.44, G.45, T.103, I.104
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain H: R.44, G.45, T.103, I.104
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain I: R.44, G.45, T.103, I.104
Ligand excluded by PLIP- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.3: 7 residues within 4Å:- Chain B: R.46, G.47, I.50
- Chain F: G.47
- Chain J: R.46, G.47, I.50
9 PLIP interactions:4 interactions with chain J, 2 interactions with chain F, 3 interactions with chain B- Water bridges: J:G.47, J:G.47, J:G.47, J:E.158, F:R.46, F:G.47, B:G.47, B:G.47, B:G.47
EPE.8: 8 residues within 4Å:- Chain C: R.46, G.47, I.50
- Chain E: R.46, G.47, I.50
- Chain L: G.47, I.50
7 PLIP interactions:3 interactions with chain E, 4 interactions with chain C- Water bridges: E:R.46, E:G.47, E:I.50, C:R.46, C:G.47, C:G.47, C:I.50
EPE.17: 8 residues within 4Å:- Chain D: R.46, G.47
- Chain G: R.46, G.47, I.50
- Chain I: R.46, G.47, I.50
10 PLIP interactions:3 interactions with chain I, 4 interactions with chain D, 3 interactions with chain G- Water bridges: I:R.46, I:G.47, I:G.47, D:G.47, D:G.47, D:G.47, D:E.158, G:G.47, G:G.47, G:G.47
EPE.23: 7 residues within 4Å:- Chain A: R.46, G.47, I.50
- Chain H: R.46, G.47
- Chain K: R.46, G.47
8 PLIP interactions:1 interactions with chain K, 4 interactions with chain A, 3 interactions with chain H- Water bridges: K:G.47, A:R.46, A:G.47, A:E.158, A:E.158, H:G.47, H:G.47, H:G.47
- 5 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.11: 1 residues within 4Å:- Chain F: L.159
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:L.159, H2O.24, H2O.25, H2O.25
CA.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.26: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Haikarainen, T. et al., Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus Suis Dpr. J.Mol.Biol. (2011)
- Release Date
- 2010-11-24
- Peptides
- DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x CU: COPPER (II) ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 5 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Haikarainen, T. et al., Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus Suis Dpr. J.Mol.Biol. (2011)
- Release Date
- 2010-11-24
- Peptides
- DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L