- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x NI: NICKEL (II) ION(Non-covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.2: 6 residues within 4Å:- Chain B: G.47, I.50
- Chain F: R.46, G.47
- Chain J: R.46, G.47
9 PLIP interactions:3 interactions with chain J, 3 interactions with chain B, 3 interactions with chain F- Water bridges: J:R.46, J:G.47, J:G.47, B:R.46, B:G.47, B:I.50, F:R.46, F:R.46, F:G.47
EPE.15: 8 residues within 4Å:- Chain D: R.46, G.47
- Chain G: R.46, G.47, I.50
- Chain I: R.46, G.47, I.50
6 PLIP interactions:3 interactions with chain D, 2 interactions with chain G, 1 interactions with chain I- Water bridges: D:G.47, D:G.47, D:G.47, G:R.46, G:R.46, I:R.46
EPE.25: 8 residues within 4Å:- Chain A: R.46, G.47, I.50
- Chain H: R.46, G.47
- Chain K: R.46, G.47, I.50
5 PLIP interactions:3 interactions with chain K, 1 interactions with chain H, 1 interactions with chain A- Water bridges: K:R.46, K:G.47, K:E.158, H:R.46, A:G.47
EPE.28: 8 residues within 4Å:- Chain C: R.46, G.47
- Chain E: R.46, G.47, I.50
- Chain L: R.46, G.47, I.50
6 PLIP interactions:2 interactions with chain C, 2 interactions with chain E, 2 interactions with chain L- Water bridges: C:R.46, C:G.47, E:R.46, E:R.46, L:G.47, L:G.47
- 7 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.4: 1 residues within 4Å:- Chain B: E.106
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.106, B:E.106, H2O.5, H2O.5
CA.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.13: 1 residues within 4Å:- Chain F: L.159
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:L.159, H2O.15, H2O.16, H2O.16
CA.14: 1 residues within 4Å:- Chain F: N.101
No protein-ligand interaction detected (PLIP)CA.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.24: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.27: 1 residues within 4Å:- Chain K: G.160
No protein-ligand interaction detected (PLIP)- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 4 residues within 4Å:- Chain B: A.162, P.163, K.164
- Chain L: G.77
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain D: R.44, G.45, T.103, I.104
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain A: G.77
- Chain E: A.162, P.163, K.164
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain B: G.77
- Chain G: A.162, P.163, K.164
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain I: R.44, G.45, T.103, I.104
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain J: G.45, T.103, I.104, E.105
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Haikarainen, T. et al., Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus Suis Dpr. J.Mol.Biol. (2011)
- Release Date
- 2010-11-24
- Peptides
- DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x NI: NICKEL (II) ION(Non-covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 7 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Haikarainen, T. et al., Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus Suis Dpr. J.Mol.Biol. (2011)
- Release Date
- 2010-11-24
- Peptides
- DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L