SMTL ID : 2xt1.1

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 231) in complex with a camelid VHH.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

hetero-2-2-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: V.46, L.57, G.61, P.62, G.63, A.64, M.69 Chain C: L.86 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.63, A:A.64 Water bridges: A:G.63, A:A.64 GOL.2: 6 residues within 4Å: Chain B: Y.62, K.67, G.68, R.69, F.70, T.71 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.68 GOL.3: 8 residues within 4Å: Chain A: L.86 Chain C: V.46, L.57, G.61, P.62, G.63, A.64, M.69 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.63, C:A.64 Water bridges: C:G.63, C:A.64 GOL.4: 6 residues within 4Å: Chain D: Y.62, K.67, G.68, R.69, F.70, T.71 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igonet, S. et al., Targeting HIV-1 Virion Formation with Nanobodies -Implications for the Design of Assembly Inhibitors. To be Published

Release Date

2011-10-12

Peptides

GAG POLYPROTEIN: AC
CAMELID VHH 9: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

GAG POLYPROTEIN

CAMELID VHH 9

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