- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x NO2: NITRITE ION(Non-covalent)
NO2.3: 7 residues within 4Å:- Chain A: H.249, I.251, H.300
- Chain B: D.92, H.94, H.129
- Ligands: CU.9
No protein-ligand interaction detected (PLIP)NO2.12: 7 residues within 4Å:- Chain A: D.92, H.94, H.129
- Chain C: H.249, I.251, H.300
- Ligands: CU.2
No protein-ligand interaction detected (PLIP)NO2.15: 7 residues within 4Å:- Chain B: H.249, I.251, H.300
- Chain C: D.92, H.94, H.129
- Ligands: CU.14
No protein-ligand interaction detected (PLIP)- 11 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: L.13, V.14, A.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.15
SO4.5: 6 residues within 4Å:- Chain A: N.243, R.244, D.245
- Chain C: R.247, N.301, E.304
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:D.245, A:D.245, C:N.301
- Salt bridges: A:R.244, C:R.247
SO4.6: 4 residues within 4Å:- Chain A: H.22, E.23, Q.24, H.165
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.24
- Salt bridges: A:H.165
SO4.7: 1 residues within 4Å:- Chain A: R.270
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.270
SO4.10: 3 residues within 4Å:- Chain B: I.328, K.329, A.330
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.330
SO4.11: 3 residues within 4Å:- Chain B: L.13, V.14, A.15
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.15
SO4.16: 2 residues within 4Å:- Chain C: V.14, A.15
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.15
SO4.17: 4 residues within 4Å:- Chain C: H.22, E.23, Q.24, H.165
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.24, C:Q.24
- Salt bridges: C:H.165
SO4.18: 4 residues within 4Å:- Chain B: E.307
- Chain C: V.201, Q.202, R.205
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:V.201
- Salt bridges: C:R.205
SO4.19: 1 residues within 4Å:- Chain C: R.270
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.270
SO4.20: 1 residues within 4Å:- Chain C: N.225
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.225, C:N.225
- Salt bridges: C:K.217
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leferink, N.G.H. et al., Proton-Coupled Electron Transfer in the Catalytic Cycle of Alcaligenes Xylosoxidans Copper-Dependent Nitrite Reductase. Biochemistry (2011)
- Release Date
- 2011-05-18
- Peptides
- DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x NO2: NITRITE ION(Non-covalent)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leferink, N.G.H. et al., Proton-Coupled Electron Transfer in the Catalytic Cycle of Alcaligenes Xylosoxidans Copper-Dependent Nitrite Reductase. Biochemistry (2011)
- Release Date
- 2011-05-18
- Peptides
- DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
E