SMTL ID : 2xyv.1

Crystal structure of the nsp16 nsp10 SARS coronavirus complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.220 NA.2: 6 residues within 4Å: Chain A: L.59, A.60, G.164, G.165, S.166, N.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.60, A:G.165, A:N.210 Water bridges: A:S.166 NA.3: 4 residues within 4Å: Chain A: N.29, T.172, E.173, H.174 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.29, A:T.172, A:E.173, A:H.174 Water bridges: A:N.29

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: I.219, D.220, T.223, M.224 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: Q.52, N.55, K.249 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.279 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: L.57, T.58 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: K.19, R.104 Ligand excluded by PLIP

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.8: 16 residues within 4Å: Chain A: N.43, Y.47, G.71, A.72, G.73, S.74, P.80, G.81, D.99, L.100, D.114, C.115, D.130, M.131, Y.132, F.149 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.43, A:G.71, A:G.73, A:G.81, A:L.100, A:D.114, A:C.115, A:Y.132 Water bridges: A:G.71, A:A.116

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 1 residues within 4Å: Chain A: E.276 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.10: 4 residues within 4Å: Chain B: C.65, C.68, H.74, C.81 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.65, B:C.68, B:H.74, B:C.81 ZN.11: 5 residues within 4Å: Chain B: C.108, V.110, C.111, C.119, S.120 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.108, B:C.111, B:C.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decroly, E. et al., Crystal Structure and Functional Analysis of the Sars-Coronavirus RNA CAP 2'-O-Methyltransferase Nsp10/Nsp16 Complex. Plos Pathog. (2011)

Release Date

2011-10-26

Peptides

PUTATIVE 2'-O-METHYL TRANSFERASE: A
NON-STRUCTURAL PROTEIN 10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PUTATIVE 2'-O-METHYL TRANSFERASE

NON-STRUCTURAL PROTEIN 10

Related Entries With Identical Sequence