SMTL ID : 2xz4.1 (1 other biounit)

Crystal structure of the LFZ ectodomain of the peptidoglycan recognition protein LF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 2 residues within 4Å: Chain A: I.10, E.15 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.10, A:E.15, A:E.15, H2O.1

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: I.10, F.75, W.89, L.128 No protein-ligand interaction detected (PLIP) EDO.3: 7 residues within 4Å: Chain A: H.38, H.39, T.40, Y.73, V.96, H.147, S.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.38

1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.4: 6 residues within 4Å: Chain A: I.122, K.126, Y.142, I.144, W.167, P.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basbous, N. et al., The Drosophila Peptidoglycan-Recognition Protein Lf Interacts with Peptidoglycan-Recognition Protein Lc to Downregulate the Imd Pathway. Embo Rep. (2011)

Release Date

2011-04-13

Peptides

PEPTIDOGLYCAN-RECOGNITION PROTEIN LF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEPTIDOGLYCAN-RECOGNITION PROTEIN LF

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