SMTL ID : 2y05.2 (3 other biounits)

Crystal structure of human leukotriene B4 12-hydroxydehydrogenase in complex with NADP and raloxifene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: P.47, M.123, T.127, A.148, G.151, A.152, V.153, V.172, G.173, K.177, Y.192, N.216, V.217, C.238, G.239, A.240, I.241, S.242, Y.244, F.269, V.270, V.271, M.315, L.316, G.318, N.320 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:T.127 Hydrogen bonds: A:A.152, A:V.153, A:G.173, A:K.177, A:Y.192, A:N.216, A:A.240, A:I.241, A:F.269, A:V.271, A:N.320, A:N.320 Water bridges: A:Y.48, A:G.151, A:G.154, A:Y.192, A:K.323, A:T.324 Salt bridges: A:K.177

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: K.99 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.288, W.289 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: Q.65, L.85, A.86, S.87, D.100, E.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.65, A:A.86, A:E.102, A:E.102 EDO.5: 5 residues within 4Å: Chain A: G.14, Y.15, S.242, N.245, R.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.15, A:S.242, A:N.245 Water bridges: A:N.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, W.W. et al., Crystal Structure of Human Leukotriene B4 12-Hydroxydehydrogenase in Complex with Nadp and Raloxifene. To be Published

Release Date

2011-01-26

Peptides

PROSTAGLANDIN REDUCTASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PROSTAGLANDIN REDUCTASE 1

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