SMTL ID : 2y05.3 (3 other biounits)

Crystal structure of human leukotriene B4 12-hydroxydehydrogenase in complex with NADP and raloxifene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: P.47, M.123, T.127, A.148, G.151, A.152, V.153, V.172, G.173, K.177, Y.192, N.216, V.217, C.238, G.239, A.240, I.241, S.242, Y.244, F.269, V.270, V.271, M.315, L.316, G.318, N.320 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.127 Hydrogen bonds: A:A.152, A:V.153, A:G.173, A:K.177, A:Y.192, A:N.216, A:C.238, A:A.240, A:I.241, A:Y.244, A:V.271, A:G.318, A:N.320, A:N.320 Water bridges: A:Y.15, A:D.46, A:D.46, A:G.154, A:A.171, A:Y.192 Salt bridges: A:K.177, A:K.193

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.275, G.276, D.277, A.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.277, A:A.278 EDO.3: 8 residues within 4Å: Chain A: L.85, E.102, L.104, L.105, A.117, V.121, G.122, L.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.105, A:A.117 EDO.4: 4 residues within 4Å: Chain A: E.196, S.197, L.198, E.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.197, A:L.198, A:E.199

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: E.58 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, W.W. et al., Crystal Structure of Human Leukotriene B4 12-Hydroxydehydrogenase in Complex with Nadp and Raloxifene. To be Published

Release Date

2011-01-26

Peptides

PROSTAGLANDIN REDUCTASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

PROSTAGLANDIN REDUCTASE 1

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