- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A01: [(2,6-DIMETHOXYPHENYL)CARBONYLAMINO]METHYL-TRIHYDROXY-BORON(Covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: T.266, Q.269, K.286
8 PLIP interactions:8 interactions with chain A- Water bridges: A:F.155, A:E.248, A:E.248, A:Q.269, A:K.286, A:K.286
- Salt bridges: A:K.158, A:K.286
SO4.20: 3 residues within 4Å:- Chain B: T.266, Q.269, K.286
7 PLIP interactions:7 interactions with chain B- Water bridges: B:F.155, B:E.248, B:T.266, B:Q.269, B:K.286
- Salt bridges: B:K.158, B:K.286
- 30 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 2 residues within 4Å:- Chain A: R.232, G.253
Ligand excluded by PLIPCL.4: 3 residues within 4Å:- Chain A: V.236, V.238, K.239
Ligand excluded by PLIPCL.5: 3 residues within 4Å:- Chain A: S.328, R.330, K.336
Ligand excluded by PLIPCL.6: 3 residues within 4Å:- Chain A: N.462, K.463, S.464
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain A: S.478, D.479, A.480
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain A: A.295, D.296, R.298
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: S.429, E.430, K.438
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: Y.247, E.248, V.265, Q.269
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: H.287, V.288, I.289
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain A: D.40, Y.41, L.42, H.102, Q.106
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain A: Q.309, S.312, K.313
Ligand excluded by PLIPCL.14: 6 residues within 4Å:- Chain A: Y.10, S.11, D.12, I.97, D.98, Q.99
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain A: H.381, D.382, D.383
Ligand excluded by PLIPCL.21: 3 residues within 4Å:- Chain B: R.232, Y.252, G.253
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain B: V.238, K.239
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain B: R.330, K.336
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain B: N.462, K.463, S.464
Ligand excluded by PLIPCL.25: 2 residues within 4Å:- Chain B: S.470, R.472
Ligand excluded by PLIPCL.26: 3 residues within 4Å:- Chain B: S.429, E.430, K.438
Ligand excluded by PLIPCL.27: 4 residues within 4Å:- Chain B: Y.247, E.248, V.265, Q.269
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain B: H.287, V.288, I.289
Ligand excluded by PLIPCL.29: 5 residues within 4Å:- Chain B: D.40, Y.41, L.42, H.102, Q.106
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain B: S.312, K.313
Ligand excluded by PLIPCL.31: 6 residues within 4Å:- Chain B: Y.10, S.11, D.12, I.97, D.98, Q.99
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain B: Y.41, F.44, T.45, N.152
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain B: H.381, D.382, D.383
Ligand excluded by PLIPCL.34: 4 residues within 4Å:- Chain B: R.159, S.160, E.264, N.363
Ligand excluded by PLIPCL.35: 2 residues within 4Å:- Chain B: I.475, G.476
Ligand excluded by PLIPCL.39: 4 residues within 4Å:- Chain A: T.334, S.337
- Chain B: T.334, S.337
Ligand excluded by PLIPCL.40: 2 residues within 4Å:- Chain B: N.195, N.197
Ligand excluded by PLIP- 2 x NA: SODIUM ION(Non-functional Binders)
NA.16: 4 residues within 4Å:- Chain A: T.355, G.356, T.357
- Ligands: A01.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.355, A:T.355
NA.36: 4 residues within 4Å:- Chain B: T.355, G.356, T.357
- Ligands: A01.19
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.355, B:T.355
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.17: 6 residues within 4Å:- Chain A: S.182, E.183, G.321, L.322, E.325, Y.459
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.182, A:S.182, A:E.325
- Water bridges: A:E.183, A:L.322
EDO.18: 4 residues within 4Å:- Chain A: N.343, Q.408, Q.409, P.412
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.343, A:Q.408, A:Q.409
EDO.37: 4 residues within 4Å:- Chain B: G.321, L.322, E.325, Y.459
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.325
- Water bridges: B:S.182, B:E.183, B:L.322
EDO.38: 4 residues within 4Å:- Chain B: N.343, Q.408, Q.409, P.412
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.343, B:N.343, B:Q.408
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Contreras-Martel, C. et al., Structure-Guided Design of Cell Wall Biosynthesis Inhibitors that Overcome Beta-Lactam Resistance in Staphylococcus Aureus (Mrsa). Acs Chem.Biol. (2011)
- Release Date
- 2011-08-03
- Peptides
- PENICILLIN-BINDING PROTEIN 1B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A01: [(2,6-DIMETHOXYPHENYL)CARBONYLAMINO]METHYL-TRIHYDROXY-BORON(Covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 30 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Contreras-Martel, C. et al., Structure-Guided Design of Cell Wall Biosynthesis Inhibitors that Overcome Beta-Lactam Resistance in Staphylococcus Aureus (Mrsa). Acs Chem.Biol. (2011)
- Release Date
- 2011-08-03
- Peptides
- PENICILLIN-BINDING PROTEIN 1B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B