SMTL ID : 2y7p.1

DntR Inducer Binding Domain in Complex with Salicylate. Trigonal crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

4 x SAL: 2-HYDROXYBENZOIC ACID(Non-covalent)

SAL.1: 11 residues within 4Å: Chain A: T.15, I.17, G.18, Y.21, F.22, G.63, F.78, H.80, H.117, P.157, I.184 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.17, A:Y.21, A:Y.21, A:F.22, A:F.78, A:I.184 Water bridges: A:G.18, A:L.64, A:L.64 Salt bridges: A:H.117 SAL.2: 7 residues within 4Å: Chain A: M.1, P.3, S.6, R.8, P.196, G.197, W.200 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.200, A:W.200, A:W.200 Hydrogen bonds: A:S.6 Water bridges: A:G.197 Salt bridges: A:R.8 SAL.4: 11 residues within 4Å: Chain B: T.15, I.17, G.18, Y.21, F.22, G.63, F.78, H.80, H.117, P.157, I.184 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.17, B:Y.21, B:Y.21, B:F.22, B:F.78, B:I.184 Hydrogen bonds: B:T.15 Water bridges: B:G.18, B:L.64, B:L.64 Salt bridges: B:H.117 SAL.5: 7 residues within 4Å: Chain B: M.1, P.3, S.6, R.8, P.196, G.197, W.200 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.200, B:W.200, B:W.200 Hydrogen bonds: B:S.6 Water bridges: B:G.197 Salt bridges: B:R.8

2 x PEU: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL(Non-covalent)

PEU.3: 12 residues within 4Å: Chain A: I.17, M.20, Y.21, I.141, R.159, F.160, R.163, P.167 Chain B: P.145, H.148, P.167, F.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.163 PEU.6: 12 residues within 4Å: Chain A: P.145, H.148, P.167, F.168 Chain B: I.17, M.20, Y.21, I.141, R.159, F.160, R.163, P.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devesse, L. et al., Crystal Structures of Dntr Inducer Binding Domains in Complex with Salicylate Offer Insights Into the Activation of Lysr-Type Transcriptional Regulators. Mol.Microbiol. (2011)

Release Date

2011-07-20

Peptides

LYSR-TYPE REGULATORY PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

LYSR-TYPE REGULATORY PROTEIN

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