SMTL ID : 2ya3.1

STRUCTURE OF THE REGULATORY FRAGMENT OF MAMMALIAN AMPK IN COMPLEX WITH COUMARIN ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x J7V: 3'-(7-diethylaminocoumarin-3-carbonylamino)-3'-deoxy-ADP(Non-covalent)

J7V.1: 19 residues within 4Å: Chain C: M.84, T.86, I.87, T.88, D.89, N.92, R.96, W.116, Y.120, L.121, K.126, P.127, L.128, V.129, I.149, H.150, R.151, P.153, K.242 26 PLIP interactions: 26 interactions with chain C Hydrophobic interactions: C:R.96, C:W.116, C:Y.120, C:L.121 Hydrogen bonds: C:I.87, C:T.88, C:T.88, C:D.89, C:N.92, C:K.126, C:V.129, C:V.129, C:H.150, C:R.151 Water bridges: C:D.89, C:R.117, C:R.151, C:R.151, C:R.151 Salt bridges: C:H.150, C:H.150, C:R.151, C:K.242, C:K.242 pi-Stacking: C:Y.120, C:Y.120 J7V.2: 14 residues within 4Å: Chain C: R.69, K.169, S.225, I.239, S.241, K.242, F.243, R.268, G.274, V.275, L.276, V.296, H.297, R.298 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:F.243 Hydrogen bonds: C:S.241, C:S.241, C:S.241, C:K.242, C:F.243, C:R.268, C:L.276, C:L.276, C:H.297, C:R.298 Water bridges: C:S.225, C:R.268, C:R.298 Salt bridges: C:R.69, C:R.69, C:K.169, C:R.298, C:R.298

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 14 residues within 4Å: Chain C: H.150, T.199, N.202, I.203, A.204, V.224, S.225, A.226, P.228, H.297, I.311, S.313, S.315, D.316 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:T.199, C:T.199, C:A.204, C:A.204, C:S.225, C:S.225, C:S.313, C:S.315, C:D.316 Water bridges: C:D.316 Salt bridges: C:H.150, C:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, B. et al., Structure of Mammalian Ampk and its Regulation by Adp. Nature (2011)

Release Date

2011-03-16

Peptides

5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1: A
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2: B
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1

5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2

5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1

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