SMTL ID : 4eag.1

Co-crystal structure of an chimeric AMPK core with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 16 residues within 4Å: Chain C: M.84, T.86, I.87, T.88, D.89, Q.122, K.126, P.127, L.128, V.129, I.149, H.150, R.151, P.153, S.225, F.243 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:T.86, C:T.88, C:T.88, C:D.89, C:Q.122, C:V.129, C:V.129, C:H.150, C:R.151 Water bridges: C:I.87, C:I.87, C:H.150, C:S.225 Salt bridges: C:H.150, C:H.150, C:H.150, C:R.151, C:K.242 ATP.2: 18 residues within 4Å: Chain C: H.150, H.168, T.199, N.202, I.203, A.204, V.224, S.225, A.226, L.227, P.228, H.297, R.298, I.311, S.313, L.314, S.315, D.316 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:T.199, C:A.204, C:A.204, C:S.225, C:S.225, C:H.297, C:H.297, C:S.313, C:L.314, C:S.315, C:S.315, C:D.316 Water bridges: C:S.225 Salt bridges: C:H.150, C:H.150, C:H.150, C:H.297, C:R.298, C:R.298

1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.3: 7 residues within 4Å: Chain C: V.68, R.69, R.151, T.167, K.169, R.170, H.297 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:T.167 Hydrogen bonds: C:R.69, C:R.151, C:R.151, C:K.169, C:K.169 Water bridges: C:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., AMP-activated protein kinase undergoes nucleotide-dependent conformational changes. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-06-06

Peptides

EG:132E8.2 protein: A
5'-AMP-activated protein kinase subunit beta-1: B
5'-AMP-activated protein kinase subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

EG:132E8.2 protein

5'-AMP-activated protein kinase subunit beta-1

5'-AMP-activated protein kinase subunit gamma-1

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