SMTL ID : 2yab.1

Crystal structure of the autoinhibited form of mouse DAPK2 in complex with AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 17 residues within 4Å: Chain A: L.20, G.21, S.22, G.23, A.26, V.28, A.41, K.43, I.78, L.94, E.95, L.96, V.97, E.144, M.147, I.161, D.162 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:E.95, A:V.97, A:D.162 Water bridges: A:S.22, A:K.43, A:E.101, A:D.162, A:D.162, A:D.162, A:G.164 Salt bridges: A:K.43 AMP.4: 19 residues within 4Å: Chain B: L.20, G.21, S.22, G.23, A.26, V.28, A.41, K.43, I.78, L.94, E.95, L.96, V.97, S.98, E.101, N.145, M.147, I.161, D.162 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:E.95, B:V.97, B:E.101, B:D.162, B:D.162 Water bridges: B:K.43, B:E.144, B:N.145 Salt bridges: B:K.43

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.272 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.272 SO4.5: 4 residues within 4Å: Chain B: Q.108, K.109, E.110, S.111 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.110, B:S.111 Water bridges: B:Q.108, B:Q.108 Salt bridges: B:K.109 SO4.6: 3 residues within 4Å: Chain A: Q.300 Chain B: S.50, R.51 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.300, B:R.51 Water bridges: B:R.51 SO4.7: 4 residues within 4Å: Chain A: P.182, K.223 Chain B: F.25, R.54 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.54 Water bridges: B:Q.24, A:K.223, A:K.223 Salt bridges: A:K.223 SO4.8: 4 residues within 4Å: Chain A: F.25, R.54 Chain B: P.182, K.223 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.54 Water bridges: A:E.61, A:E.61, B:K.223, B:K.223, B:K.223 Salt bridges: B:K.223

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: N.191, Y.192 Chain B: N.191, Y.192 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:N.191, H2O.9, H2O.9, H2O.23, H2O.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, A.K. et al., Structure of the Dimeric Autoinhibited Conformation of Dapk2, a Pro-Apoptotic Protein Kinase. J.Mol.Biol. (2011)

Release Date

2011-04-13

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DEATH-ASSOCIATED PROTEIN KINASE 2

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