SMTL ID : 2yaj.1 (1 other biounit)

CRYSTAL STRUCTURE OF GLYCYL RADICAL ENZYME with bound substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 4HP: 4-HYDROXYPHENYLACETATE(Non-covalent)

4HP.1: 18 residues within 4Å: Chain A: F.214, I.219, R.223, S.344, G.345, V.399, L.400, F.405, G.502, C.503, E.505, G.532, H.536, F.537, E.637, C.748, I.750, V.752 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.214, A:I.219, A:R.223, A:V.399, A:F.405, A:F.537, A:I.750, A:V.752, A:V.752 Hydrogen bonds: A:S.344, A:C.503, A:H.536, A:E.637 pi-Cation interactions: A:R.223

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 10 residues within 4Å: Chain B: H.3, C.6, N.8, Y.9, C.19, L.21, A.35, C.36, N.38, F.39 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Ligand interactions Metal complexes: B:H.3, B:C.6, B:C.19, B:C.36, SF4.2, SF4.2 SF4.3: 12 residues within 4Å: Chain A: W.58, R.61 Chain B: C.45, C.48, N.50, F.51, C.62, G.64, A.77, C.80, S.82, Y.83 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.45, B:C.48, B:C.62, B:C.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martins, B.M. et al., Structural Basis for a Kolbe-Type Decarboxylation Catalyzed by a Glycyl Radical Enzyme. J.Am.Chem.Soc. (2011)

Release Date

2011-09-21

Peptides

4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT: A
4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT

4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT

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