SMTL ID : 2yf4.3 (2 other biounits)

Crystal structure of DR2231, the MazG-like protein from Deinococcus radiodurans, Apo structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.18, H.21, E.22 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.22 Water bridges: A:A.17 GOL.6: 2 residues within 4Å: Chain B: R.124, K.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.124, B:R.124, B:K.128 GOL.7: 7 residues within 4Å: Chain B: H.21, P.32, E.33, D.98, G.101, I.102, D.103 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.21, B:H.21, B:P.32 GOL.8: 6 residues within 4Å: Chain B: K.131, P.132, G.134, W.135, R.136, P.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.131, B:W.135 Water bridges: B:P.132 GOL.9: 8 residues within 4Å: Chain A: A.80, P.81, H.84 Chain B: A.138, D.139, V.140, R.141, G.142 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:H.84, B:A.138, B:D.139, B:V.140, B:R.141, B:R.141 GOL.10: 5 residues within 4Å: Chain A: Q.148 Chain B: S.75, A.76, G.77, D.78 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.75, B:A.76, B:G.77, A:Q.148

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.44 Chain B: L.65, A.69 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.44 SO4.3: 2 residues within 4Å: Chain A: R.124, K.128 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.124, A:K.128 SO4.4: 1 residues within 4Å: Chain A: R.25 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.25, A:R.25, A:R.25 Salt bridges: A:R.25 SO4.5: 3 residues within 4Å: Chain A: H.21, R.25 Ligands: GOL.1 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.25, A:R.25, A:R.25, A:R.25 Salt bridges: A:H.21, A:R.25 SO4.11: 3 residues within 4Å: Chain B: K.118, K.128, K.131 8 PLIP interactions: 8 interactions with chain B Water bridges: B:K.118, B:K.128, B:K.131, B:K.131, B:K.131 Salt bridges: B:K.118, B:K.128, B:K.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, A.M.D. et al., Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans. J.Biol.Chem. (2011)

Release Date

2011-07-06

Peptides

MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE

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