SMTL ID : 2yho.3 (3 other biounits)

The IDOL-UBE2D complex mediates sterol-dependent degradation of the LDL receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.21, C.24, C.42, C.45 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:C.42, A:C.45 ZN.2: 4 residues within 4Å: Chain A: C.36, H.38, C.52, C.55 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.36, A:H.38, A:C.52, A:C.55

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain B: I.69, S.85, I.86 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.69, B:I.86 Water bridges: B:K.68, B:K.68 Salt bridges: B:K.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., The Idol-Ube2D Complex Mediates Sterol-Dependent Degradation of the Ldl Receptor. Genes Dev. (2011)

Release Date

2011-06-29

Peptides

E3 UBIQUITIN-PROTEIN LIGASE MYLIP: A
UBIQUITIN-CONJUGATING ENZYME E2 D1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

E3 UBIQUITIN-PROTEIN LIGASE MYLIP

UBIQUITIN-CONJUGATING ENZYME E2 D1

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