SMTL ID : 2yl4.1

STRUCTURE OF THE HUMAN MITOCHONDRIAL ABC TRANSPORTER, ABCB10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x GLY: GLYCINE(Non-covalent)

GLY.1: 4 residues within 4Å: Chain A: R.20, Y.84, R.92 Chain B: R.239 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.84 Salt bridges: A:R.20, A:R.92 Water bridges: B:R.239 GLY.11: 4 residues within 4Å: Chain A: R.239 Chain B: R.20, Y.84, R.92 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.20, B:R.92 Water bridges: A:R.239

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.384, Q.425, D.508 Ligands: ACP.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.384 MG.12: 4 residues within 4Å: Chain B: S.384, Q.425, D.508 Ligands: ACP.13 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.384

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.3: 11 residues within 4Å: Chain A: Y.351, I.359, G.380, S.381, G.382, K.383, S.384, T.385, Y.394, Q.425 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.380, A:S.381, A:G.382, A:K.383, A:K.383, A:S.384, A:T.385, A:Y.394, A:Q.425, A:Q.425 pi-Stacking: A:Y.351, A:Y.351 ACP.13: 11 residues within 4Å: Chain B: Y.351, I.359, G.380, S.381, G.382, K.383, S.384, T.385, Y.394, Q.425 Ligands: MG.12 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.380, B:S.381, B:G.382, B:K.383, B:K.383, B:S.384, B:T.385, B:T.385, B:Y.394, B:Y.394, B:Q.425 pi-Stacking: B:Y.351, B:Y.351

8 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.4: 15 residues within 4Å: Chain A: D.47, Y.50, T.51, L.264, G.268, M.271, T.277, V.278 Chain B: I.49, P.53, Y.57, L.61, L.64, L.68 Ligands: CDL.20 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.264, A:M.271, B:Y.57, B:L.61, B:L.61, B:L.64, B:L.68 Hydrogen bonds: A:D.47, A:D.47, A:Y.50, A:V.278, B:P.53 LMT.6: 8 residues within 4Å: Chain A: I.154, M.157, A.165, L.169, V.172, S.176, I.295 Ligands: LMT.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.154, A:V.172, A:I.295 LMT.7: 6 residues within 4Å: Chain A: V.172, A.288, V.291, I.295, S.299 Ligands: LMT.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.172, A:V.291, A:I.295 LMT.8: 12 residues within 4Å: Chain A: N.163, F.167, S.255, L.258, I.259, S.262, Y.265, K.266, L.269, L.270, H.275 Ligands: CDL.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.167, A:L.258, A:I.259, A:Y.265 Hydrogen bonds: A:N.163, A:N.163 Salt bridges: A:K.266, A:K.266 LMT.14: 15 residues within 4Å: Chain A: I.49, P.53, Y.57, L.61, L.64, L.68 Chain B: D.47, Y.50, T.51, L.264, G.268, M.271, T.277, V.278 Ligands: CDL.10 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.57, A:L.61, A:L.61, A:L.64, A:L.68, B:L.264, B:M.271 Hydrogen bonds: A:P.53, B:D.47, B:V.278 LMT.16: 8 residues within 4Å: Chain B: I.154, M.157, A.165, L.169, V.172, S.176, I.295 Ligands: LMT.17 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.154, B:V.172, B:I.295 LMT.17: 6 residues within 4Å: Chain B: V.172, A.288, V.291, I.295, S.299 Ligands: LMT.16 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.172, B:V.291, B:I.295 LMT.18: 12 residues within 4Å: Chain B: N.163, F.167, S.255, L.258, I.259, S.262, Y.265, K.266, L.269, L.270, H.275 Ligands: CDL.15 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.167, B:L.258, B:I.259, B:Y.265 Hydrogen bonds: B:N.163, B:N.163 Salt bridges: B:K.266, B:K.266

4 x CDL: CARDIOLIPIN(Non-covalent)

CDL.5: 12 residues within 4Å: Chain A: F.158, P.162, N.163, T.166, F.167, L.169, V.171, P.174, V.175, I.178, K.266 Ligands: LMT.8 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.158, A:F.158, A:P.162, A:L.169, A:V.171, A:P.174, A:V.175, A:I.178 Hydrogen bonds: A:N.163, A:N.163, A:T.166, A:S.170 Salt bridges: A:K.266 CDL.10: 8 residues within 4Å: Chain A: F.41, L.42, I.45, L.64 Chain B: N.257, V.260, L.264 Ligands: LMT.14 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.41, A:F.41, A:L.42, A:I.45, A:L.64, B:V.260, B:V.260, B:L.264 CDL.15: 12 residues within 4Å: Chain B: F.158, P.162, N.163, T.166, F.167, L.169, V.171, P.174, V.175, I.178, K.266 Ligands: LMT.18 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.158, B:F.158, B:P.162, B:L.169, B:V.171, B:P.174, B:V.175, B:I.178 Hydrogen bonds: B:N.163, B:N.163, B:S.170 Salt bridges: B:K.266 CDL.20: 8 residues within 4Å: Chain A: N.257, V.260, L.264 Chain B: F.41, L.42, I.45, L.64 Ligands: LMT.4 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.41, B:F.41, B:L.42, B:I.45, B:L.64, A:V.260, A:V.260, A:L.264

2 x 14Y: METHYL(E)-OCTADEC-9-ENOATE(Non-covalent)

14Y.9: 7 residues within 4Å: Chain A: F.27, M.30, S.31, I.34, V.71 Chain B: G.253, N.257 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.27, A:F.27, A:M.30, A:I.34, A:V.71 Hydrogen bonds: B:N.257 14Y.19: 7 residues within 4Å: Chain A: G.253, N.257 Chain B: F.27, M.30, S.31, I.34, V.71 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.27, B:F.27, B:M.30, B:I.34, B:V.71 Hydrogen bonds: A:N.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pike, A.C.W. et al., Structure of the Human Mitochondrial Abc Transporter, Abcb10. To be Published

Release Date

2012-01-25

Peptides

ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL

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