SMTL ID : 3zdq.1

STRUCTURE OF THE HUMAN MITOCHONDRIAL ABC TRANSPORTER, ABCB10 (NUCLEOTIDE-FREE FORM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x GLY: GLYCINE(Non-covalent)

GLY.1: 3 residues within 4Å: Chain A: R.20, Y.84, R.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.84, A:Y.84 Salt bridges: A:R.20, A:R.92 GLY.7: 3 residues within 4Å: Chain B: R.20, Y.84, R.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.84 Salt bridges: B:R.20, B:R.92

6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.2: 13 residues within 4Å: Chain A: D.47, Y.50, T.51, L.264, G.268, M.271, G.272, T.277, V.278 Chain B: I.49, P.53, L.64, L.68 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.47, A:D.47, A:V.278 Hydrophobic interactions: B:I.49, B:I.49, B:L.64, B:L.68 LMT.4: 7 residues within 4Å: Chain A: V.168, V.172, A.288, G.292, I.295, G.296, S.299 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.168, A:V.172, A:A.288, A:I.295, A:I.295 LMT.5: 14 residues within 4Å: Chain A: N.163, F.167, V.175, S.255, L.258, I.259, S.262, Y.265, K.266, L.269, L.270, S.273, H.275 Ligands: CDL.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.167, A:V.175, A:L.258, A:I.259, A:Y.265, A:K.266 Hydrogen bonds: A:S.273 Salt bridges: A:K.266, A:K.266 LMT.8: 13 residues within 4Å: Chain A: I.49, P.53, L.64, L.68 Chain B: D.47, Y.50, T.51, L.264, G.268, M.271, G.272, T.277, V.278 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:D.47, B:V.278 Hydrophobic interactions: A:I.49, A:I.49, A:L.64, A:L.68 LMT.10: 7 residues within 4Å: Chain B: V.168, V.172, A.288, G.292, I.295, G.296, S.299 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.168, B:V.172, B:A.288, B:I.295, B:I.295 LMT.11: 14 residues within 4Å: Chain B: N.163, F.167, V.175, S.255, L.258, I.259, S.262, Y.265, K.266, L.269, L.270, S.273, H.275 Ligands: CDL.9 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.167, B:V.175, B:L.258, B:I.259, B:Y.265, B:K.266 Hydrogen bonds: B:S.273 Salt bridges: B:K.266, B:K.266

4 x CDL: CARDIOLIPIN(Non-covalent)

CDL.3: 16 residues within 4Å: Chain A: F.158, P.162, N.163, T.166, F.167, L.169, S.170, V.171, P.174, V.175, I.178, A.179, A.251, S.255, K.266 Ligands: LMT.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.158, A:F.158, A:P.162, A:T.166, A:L.169, A:P.174, A:V.175, A:I.178, A:I.178, A:A.179 Hydrogen bonds: A:N.163, A:N.163, A:T.166 Salt bridges: A:K.266 CDL.6: 8 residues within 4Å: Chain A: M.30, S.31, I.34, V.71, C.74, G.75, N.79 Chain B: N.257 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.34, A:I.34, A:V.71 Hydrogen bonds: A:N.79, B:N.257 CDL.9: 16 residues within 4Å: Chain B: F.158, P.162, N.163, T.166, F.167, L.169, S.170, V.171, P.174, V.175, I.178, A.179, A.251, S.255, K.266 Ligands: LMT.11 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.158, B:F.158, B:P.162, B:T.166, B:L.169, B:P.174, B:V.175, B:I.178, B:I.178, B:A.179 Hydrogen bonds: B:N.163, B:N.163 Salt bridges: B:K.266 CDL.12: 8 residues within 4Å: Chain A: N.257 Chain B: M.30, S.31, I.34, V.71, C.74, G.75, N.79 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.34, B:I.34, B:V.71 Hydrogen bonds: B:N.79, A:N.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shintre, C.A. et al., Structures of Abcb10, a Human ATP-Binding Cassette Transporter in Apo- and Nucleotide-Bound States. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-01-23

Peptides

ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Membrane

We predict this structure to be a membrane protein.
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ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL

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