- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
HEC.1: 32 residues within 4Å:- Chain A: V.9, R.12, Q.13, L.16, T.17, M.19, A.20, F.23, L.48, W.56, F.59, G.65, G.66, D.67, A.68, R.69, I.72, F.79, K.82, Q.83, F.86, I.90, V.112, S.115, C.116, C.119, H.120, Y.123, R.124
- Ligands: CMO.2, ASC.3, SO4.4
22 PLIP interactions:21 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:W.56, A:W.56, A:F.59, A:I.72, A:F.79, A:Q.83, A:F.86, A:F.86, A:V.112, A:R.124
- Hydrogen bonds: A:Q.13, A:T.17, A:D.67, A:A.68
- Water bridges: A:T.17, A:T.17, A:D.67
- Salt bridges: A:R.12
- pi-Stacking: A:H.120
- pi-Cation interactions: A:R.124
- Metal complexes: A:H.120, CMO.2
HEC.6: 32 residues within 4Å:- Chain B: V.9, R.12, Q.13, L.16, T.17, M.19, A.20, F.23, L.48, W.56, F.59, G.65, G.66, D.67, A.68, R.69, I.72, F.79, K.82, Q.83, F.86, I.90, V.112, S.115, C.116, C.119, H.120, Y.123, R.124
- Ligands: CMO.7, ASC.8, SO4.9
21 PLIP interactions:20 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:W.56, B:W.56, B:F.59, B:I.72, B:F.79, B:Q.83, B:F.86, B:F.86, B:V.112, B:R.124
- Hydrogen bonds: B:Q.13, B:T.17, B:D.67, B:A.68
- Water bridges: B:T.17, B:T.17
- Salt bridges: B:R.12
- pi-Stacking: B:H.120
- pi-Cation interactions: B:R.124
- Metal complexes: B:H.120, CMO.7
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
CMO.2: 6 residues within 4Å:- Chain A: L.16, M.19, P.55, W.56, H.120
- Ligands: HEC.1
No protein-ligand interaction detected (PLIP)CMO.7: 6 residues within 4Å:- Chain B: L.16, M.19, P.55, W.56, H.120
- Ligands: HEC.6
No protein-ligand interaction detected (PLIP)- 2 x ASC: ASCORBIC ACID(Non-covalent)
ASC.3: 10 residues within 4Å:- Chain A: A.20, F.23, G.24, G.113, C.116, K.117, H.120, R.124
- Ligands: HEC.1, SO4.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.120
- Water bridges: A:G.113, A:R.124, A:R.124, A:R.124
ASC.8: 10 residues within 4Å:- Chain B: A.20, F.23, G.24, G.113, C.116, K.117, H.120, R.124
- Ligands: HEC.6, SO4.9
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.120
- Water bridges: B:G.113, B:R.124, B:R.124, B:R.124
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: H.120, R.124
- Ligands: HEC.1, ASC.3
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.124
- Salt bridges: A:R.124
SO4.5: 3 residues within 4Å:- Chain A: R.69, K.125, K.126
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.126
- Water bridges: A:K.125, A:K.125
- Salt bridges: A:R.69
SO4.9: 4 residues within 4Å:- Chain B: H.120, R.124
- Ligands: HEC.6, ASC.8
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.124
- Salt bridges: B:R.124
SO4.10: 3 residues within 4Å:- Chain B: R.69, K.125, K.126
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.126
- Water bridges: B:K.125
- Salt bridges: B:R.69
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Carbon Monoxide Poisoning is Prevented by the Energy Costs of Conformational Changes in Gas- Binding Haemproteins. Proc.Natl.Acad.Sci.USA (2011)
- Release Date
- 2011-10-05
- Peptides
- CYTOCHROME C': AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 2 x ASC: ASCORBIC ACID(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antonyuk, S.V. et al., Carbon Monoxide Poisoning is Prevented by the Energy Costs of Conformational Changes in Gas- Binding Haemproteins. Proc.Natl.Acad.Sci.USA (2011)
- Release Date
- 2011-10-05
- Peptides
- CYTOCHROME C': AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A