SMTL ID : 2ynd.2 (2 other biounits)

Plasmodium vivax N-myristoyltransferase in complex with a pyrazole sulphonamide inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: E.134, F.256, W.264, I.382 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:E.134 pi-Cation interactions: A:W.264, A:W.264

1 x NHW: 2-oxopentadecyl-CoA(Non-covalent)

NHW.2: 35 residues within 4Å: Chain A: Y.3, K.4, F.5, W.6, N.69, Y.70, V.71, V.135, N.136, F.137, L.138, C.139, V.140, R.145, S.146, K.147, R.148, L.149, A.150, P.151, I.154, T.158, I.161, N.162, I.166, W.167, Q.168, A.169, Y.171, T.172, A.173, L.177, Y.368 Ligands: 646.3, MG.4 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:W.6, A:W.6, A:Y.70, A:V.135, A:L.138, A:L.138, A:L.138, A:V.140, A:I.154, A:I.161, A:I.161, A:A.169, A:Y.171, A:Y.171, A:Y.368 Hydrogen bonds: A:K.4, A:F.5, A:W.6, A:Y.70, A:F.137, A:L.138, A:L.138, A:V.140, A:R.145, A:R.145, A:S.146, A:R.148, A:L.149, A:A.150 Water bridges: A:Y.3, A:Y.3, A:R.148, A:R.148 Salt bridges: A:R.148, A:R.148

1 x 646: 2,6-dichloro-4-(2-piperazin-1-ylpyridin-4-yl)-N-(1,3,5-trimethyl-1H-pyrazol-4-yl)benzenesulfonamide(Non-covalent)

646.3: 19 residues within 4Å: Chain A: V.71, E.72, D.73, F.78, R.79, F.80, Y.82, T.172, G.174, Y.186, H.188, F.201, S.294, L.305, Y.309, N.340, L.363, L.385 Ligands: NHW.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:D.73, A:F.78, A:F.80, A:F.80, A:Y.186, A:Y.186, A:F.201, A:L.305 Hydrogen bonds: A:Y.82, A:T.172, A:S.294, A:L.385 Water bridges: A:N.136, A:Y.309, A:D.360, A:L.385 Halogen bonds: A:N.340

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 7 residues within 4Å: Chain A: L.144, R.145, S.146, K.147, R.148, L.149 Ligands: NHW.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.144

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: Y.40, K.155 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, M.H. et al., Validation of N-Myristoyltransferase as an Antimalarial Drug Target Using an Integrated Chemical Biology Approach. Nat.Chem. (2014)

Release Date

2014-01-15

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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