SMTL ID : 5g22.2 (2 other biounits)

Plasmodium vivax N-myristoyltransferase in complex with a quinoline inhibitor (compound 26)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

monomer

Ligands

1 x NHW: 2-oxopentadecyl-CoA(Non-covalent)

NHW.1: 35 residues within 4Å: Chain A: Y.3, K.4, F.5, W.6, N.69, Y.70, V.71, V.135, N.136, F.137, L.138, C.139, V.140, R.145, S.146, K.147, R.148, L.149, A.150, P.151, I.154, T.158, I.161, N.162, I.166, W.167, Q.168, A.169, Y.171, T.172, A.173, L.177, Y.368 Ligands: YN4.2, MG.3 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.70, A:V.71, A:L.138, A:L.138, A:A.150, A:I.154, A:I.154, A:I.154, A:T.158, A:I.161, A:I.161, A:A.169, A:Y.171, A:Y.171, A:Y.171, A:Y.368 Hydrogen bonds: A:Y.3, A:K.4, A:F.5, A:W.6, A:Y.70, A:F.137, A:L.138, A:L.138, A:V.140, A:R.145, A:R.145, A:S.146, A:R.148, A:L.149, A:A.150 Water bridges: A:R.148 Salt bridges: A:R.148

1 x YN4: ETHYL 4-[(2-CYANOETHYL)SULFANYL]-6-{[6-(PIPERAZIN-1-YL)(Non-covalent)

YN4.2: 17 residues within 4Å: Chain A: V.71, E.72, D.73, F.78, F.80, G.174, Y.186, H.188, L.196, F.201, S.294, L.305, Y.309, N.340, L.363, L.385 Ligands: NHW.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.71, A:D.73, A:F.78, A:F.78, A:L.196, A:F.201, A:Y.309 Hydrogen bonds: A:T.172, A:S.294, A:N.340, A:L.385 Water bridges: A:Y.82, A:Y.309 Salt bridges: A:H.188 pi-Stacking: A:F.80, A:F.80

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: L.144, S.146, K.147, R.148, L.149 Ligands: NHW.1 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: T.222, L.223 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, V. et al., Structure-guided optimization of quinoline inhibitors of Plasmodium N-myristoyltransferase. Medchemcomm (2017)

Release Date

2017-02-15

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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