SMTL ID : 2ynw.1

GIM-1-2Mol native. Crystal structures of Pseudomonas aeruginosa GIM- 1: active site plasticity in metallo-beta-lactamases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.77, H.79, H.139, T.140, C.158 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.77, A:H.79, A:H.139, H2O.3 ZN.2: 7 residues within 4Å: Chain A: H.77, D.81, R.82, C.158, H.200 Chain B: G.27 Ligands: ZN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.81, A:C.158, A:H.200, H2O.3 ZN.3: 7 residues within 4Å: Chain B: H.77, H.79, D.81, H.139, T.140, C.158 Ligands: ZN.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.77, B:H.79, B:H.139, H2O.1 ZN.4: 7 residues within 4Å: Chain A: G.27 Chain B: H.77, D.81, R.82, C.158, H.200 Ligands: ZN.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.81, B:C.158, B:H.200, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 9 residues within 4Å: Chain A: H.79, Y.170, D.173 Chain B: N.24, I.25, E.26, G.27, Y.28, G.29 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:I.25, B:G.27, A:D.173 Salt bridges: A:H.79

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: Y.28, G.29 Chain B: R.161, W.165, G.169, Y.170, H.200 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.161, B:R.161, B:Y.170, A:Y.28 Water bridges: A:L.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borra, P.S. et al., Crystal Structures of Pseudomonas Aeruginosa Gim-1: Active-Site Plasticity in Metallo-Beta-Lactamases. Antimicrob.Agents Chemother. (2013)

Release Date

2013-07-24

Peptides

GIM-1 PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GIM-1 PROTEIN

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