SMTL ID : 2yog.2 (1 other biounit)

Plasmodium falciparum thymidylate kinase in complex with a (thio)urea- alpha-deoxythymidine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x 74X: 1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[[(2R,3S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxol an-2-yl]methyl]thiourea(Non-covalent)

74X.1: 13 residues within 4Å: Chain A: F.44, P.45, R.47, S.56, L.59, K.60, F.74, R.78, R.99, S.103, G.104, Y.107, I.152 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.44, A:L.59, A:F.74, A:R.99 Hydrogen bonds: A:R.78, A:R.78 Water bridges: A:R.99, A:R.99, A:R.99, A:R.99, A:G.104 pi-Stacking: A:F.74 Halogen bonds: A:S.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, H. et al., Synthesis and Evaluation of Alpha-Thymidine Analogues as Novel Antimalarials. J.Med.Chem. (2012)

Release Date

2013-07-24

Peptides

THYMIDYLATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

THYMIDYLATE KINASE

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