SMTL ID : 2yoh.1 (1 other biounit)

Plasmodium falciparum thymidylate kinase in complex with a urea-alpha- deoxythymidine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x WMJ: 1-[[(2R,3S,5S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl]-3-(4-nitrophenyl)urea(Non-covalent)

WMJ.1: 14 residues within 4Å: Chain A: D.17, R.18, S.22, F.44, P.45, L.59, F.74, R.78, R.99, S.103, G.104, Y.107, E.151, Y.153 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.44, A:L.59, A:F.74, A:R.99 Hydrogen bonds: A:S.22, A:R.78, A:R.78, A:R.99, A:E.151, A:E.151 Water bridges: A:S.75, A:G.104, A:E.151, A:Y.153 pi-Stacking: A:F.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, H. et al., Synthesis and Evaluation of Alpha-Thymidine Analogues as Novel Antimalarials. J.Med.Chem. (2012)

Release Date

2013-07-24

Peptides

THYMIDYLATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THYMIDYLATE KINASE

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