SMTL ID : 2yoj.1 (1 other biounit)

HCV NS5B polymerase complexed with pyridonylindole compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x 8Y6: 4-fluoranyl-6-[(7-fluoranyl-4-oxidanylidene-3H-quinazolin-6-yl)methyl]-8-(2-oxidanylidene-1H-pyridin-3-yl)furo[2,3-e]indole-7-carboxylic acid(Non-covalent)

8Y6.1: 16 residues within 4Å: Chain A: F.193, P.197, R.200, N.316, C.366, S.367, L.384, R.386, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448 Ligands: PO4.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:M.414, A:Y.415, A:Y.415 Hydrogen bonds: A:S.367, A:R.386, A:Q.446, A:Y.448 Water bridges: A:G.449, A:G.449, A:S.556 pi-Stacking: A:Y.448 Halogen bonds: A:N.316

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: S.367, R.386 Ligands: 8Y6.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.367, A:T.390 Water bridges: A:S.367, A:R.394, A:R.394 Salt bridges: A:R.386 PO4.3: 4 residues within 4Å: Chain A: R.505, V.530, R.531, T.532 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.531, A:T.532, A:T.532 Water bridges: A:R.505, A:R.505, A:R.505, A:R.505, A:R.505, A:T.532 Salt bridges: A:R.505

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, K.X. et al., Discovery of Sch 900188: A Potent Hepatitis C Virus Ns5B Polymerase Inhibitor Prodrug as a Development Candidate. Acs Med.Chem.Lett. (2014)

Release Date

2013-10-09

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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