SMTL ID : 2yri.1

Crystal structure of alanine-pyruvate aminotransferase with 2-methylserine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x MMM: (S,E)-3-HYDROXY-2-((3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL)METHYLENEAMINO)-2-METHYLPROPANOIC ACID(Non-covalent)

MMM.1: 19 residues within 4Å: Chain A: P.6, G.7, S.60, G.61, S.62, M.65, F.85, V.131, G.133, T.135, D.160, V.162, Q.185, K.186, R.326 Chain B: H.26, Y.229, H.231, T.232 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.85, A:V.131 Hydrogen bonds: A:S.60, A:G.61, A:S.62, A:T.135, A:Q.185, B:H.26, B:T.232, B:T.232 Water bridges: A:R.326 Salt bridges: A:K.186, A:R.326 pi-Stacking: A:F.85

1 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.2: 15 residues within 4Å: Chain A: Y.229, H.231, T.232 Chain B: S.60, G.61, S.62, M.65, F.85, V.131, G.133, T.135, D.160, V.162, Q.185, K.186 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.85, B:V.131, B:V.162 Hydrogen bonds: B:G.61, B:S.62, B:T.135, B:T.135, B:Q.185, A:Y.229, A:T.232, A:T.232, A:T.232 Water bridges: B:K.186 Salt bridges: B:K.186 pi-Stacking: B:F.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyahara, I. et al., hypothetical alanine aminotransferase (TTHA0173) from Thermus thermophilus HB8. To be Published

Release Date

2008-04-15

Peptides

Aminotransferase, class V: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminotransferase, class V

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