SMTL ID : 2yx1.1 (2 other biounits)

Crystal structure of M.jannaschii tRNA m1G37 methyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.227, E.230 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.227, A:E.230, H2O.5 ZN.2: 1 residues within 4Å: Chain A: H.243 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.243, H2O.1, H2O.5 ZN.3: 5 residues within 4Å: Chain A: F.303, E.304, C.307, D.308, C.309 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:F.303, A:C.307, A:C.307, A:C.309 ZN.4: 2 residues within 4Å: Chain A: Y.177 Ligands: SFG.5 No protein-ligand interaction detected (PLIP)

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.5: 19 residues within 4Å: Chain A: Y.177, F.178, R.186, M.202, F.203, A.204, G.205, P.208, F.209, D.223, I.224, N.225, S.250, D.251, V.252, N.265, L.266, F.273 Ligands: ZN.4 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.203, A:L.266 Hydrogen bonds: A:Y.177, A:F.203, A:G.205, A:I.224, A:D.251, A:V.252, A:N.265 Water bridges: A:S.179, A:F.209, A:N.225, A:N.265, A:N.265 Salt bridges: A:R.186 pi-Stacking: A:F.203, A:F.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto-Ito, S. et al., Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5. Proteins (2008)

Release Date

2008-04-22

Peptides

Hypothetical protein MJ0883: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypothetical protein MJ0883

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