SMTL ID : 3ay0.1 (1 other biounit)

Crystal structure of Methanocaldococcus jannaschii Trm5 in complex with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: E.111 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.111, A:E.111, H2O.1 ZN.2: 3 residues within 4Å: Chain A: K.175, H.227, E.230 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.227, A:E.230, H2O.1 ZN.3: 2 residues within 4Å: Chain A: H.11, Q.14 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.11, H2O.1, H2O.1

1 x ADN: ADENOSINE(Non-covalent)

ADN.4: 13 residues within 4Å: Chain A: Y.177, M.202, F.203, D.223, I.224, N.225, A.228, S.250, D.251, V.252, N.265, L.266, F.273 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.224, A:N.225, A:D.251, A:V.252 pi-Stacking: A:F.203, A:F.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lahoud, G. et al., Differentiating analogous tRNA methyltransferases by fragments of the methyl donor. Rna (2011)

Release Date

2011-08-17

Peptides

Uncharacterized protein MJ0883: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein MJ0883

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