SMTL ID : 2yxx.1 (1 other biounit)

Crystal structure analysis of Diaminopimelate decarboxylate (lysA)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 15 residues within 4Å: Chain A: A.44, K.46, D.65, N.88, R.132, H.177, H.179, S.182, G.213, G.214, E.246, I.247, G.248, R.249, Y.343 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.44 Hydrogen bonds: A:S.182, A:G.214, A:E.246, A:G.248, A:R.249, A:Y.343 Water bridges: A:K.46, A:Q.183 pi-Stacking: A:H.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, Y. et al., Crystal structure analysis of Diaminopimelate decarboxylate (lysA). To be Published

Release Date

2007-10-30

Peptides

Diaminopimelate decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diaminopimelate decarboxylase

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