SMTL ID : 2yxx.2 (1 other biounit)

Crystal structure analysis of Diaminopimelate decarboxylate (lysA)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 16 residues within 4Å: Chain A: A.44, K.46, D.65, N.88, R.132, H.177, H.179, S.182, G.213, G.214, E.246, I.247, G.248, R.249, Y.343 Chain B: C.314 12 PLIP interactions: 1 interactions with chain B, 11 interactions with chain A Water bridges: B:C.314, A:K.46, A:S.182, A:Q.183 Hydrophobic interactions: A:A.44 Hydrogen bonds: A:S.182, A:G.214, A:E.246, A:G.248, A:R.249, A:Y.343 pi-Stacking: A:H.179 PLP.2: 16 residues within 4Å: Chain A: C.314 Chain B: A.44, K.46, D.65, N.88, R.132, H.177, H.179, S.182, G.213, G.214, E.246, I.247, G.248, R.249, Y.343 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.44 Hydrogen bonds: B:S.182, B:G.214, B:E.246, B:G.248, B:R.249, B:Y.343 Water bridges: B:K.46, B:S.182, B:Q.183, A:C.314 pi-Stacking: B:H.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, Y. et al., Crystal structure analysis of Diaminopimelate decarboxylate (lysA). To be Published

Release Date

2007-10-30

Peptides

Diaminopimelate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Diaminopimelate decarboxylase

Related Entries With Identical Sequence