SMTL ID : 2z08.1

Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: ATP.3 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Ligands: MG.5 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ATP.6 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Ligands: ATP.9 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Ligands: MG.11 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Ligands: ATP.12 No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Ligands: MG.8 No protein-ligand interaction detected (PLIP)

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 24 residues within 4Å: Chain A: A.8, Y.9, D.10, S.12, A.15, V.36, H.37, A.38, P.87, M.105, G.106, T.107, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Chain B: R.124 Ligands: MG.1 16 PLIP interactions: 13 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.12, A:A.38, A:A.38, A:G.106, A:R.108, A:G.109, A:G.111, A:S.120, A:S.120, A:Q.121, A:S.122 Water bridges: A:L.110, A:S.120, B:R.124, B:R.124 Salt bridges: B:R.124 ATP.6: 24 residues within 4Å: Chain A: R.124 Chain B: A.8, Y.9, D.10, S.12, A.15, V.36, H.37, A.38, P.87, M.105, G.106, T.107, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Ligands: MG.4 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.12, B:A.38, B:A.38, B:G.106, B:R.108, B:G.109, B:G.111, B:S.120, B:S.120, B:Q.121, B:S.122 Water bridges: B:L.110, B:S.120, A:R.124, A:R.124 Salt bridges: A:R.124 ATP.9: 24 residues within 4Å: Chain C: A.8, Y.9, D.10, S.12, A.15, V.36, H.37, A.38, P.87, M.105, G.106, T.107, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Chain D: R.124 Ligands: MG.7 18 PLIP interactions: 15 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.10, C:S.12, C:H.37, C:A.38, C:A.38, C:G.106, C:R.108, C:G.109, C:G.111, C:S.120, C:S.120, C:Q.121, C:S.122 Water bridges: C:L.110, C:S.120, D:R.124, D:R.124 Salt bridges: D:R.124 ATP.12: 24 residues within 4Å: Chain C: R.124 Chain D: A.8, Y.9, D.10, S.12, A.15, V.36, H.37, A.38, P.87, M.105, G.106, T.107, R.108, G.109, L.110, G.111, A.112, L.116, G.119, S.120, Q.121, S.122 Ligands: MG.10 18 PLIP interactions: 15 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:D.10, D:S.12, D:H.37, D:A.38, D:A.38, D:G.106, D:R.108, D:G.109, D:G.111, D:S.120, D:S.120, D:Q.121, D:S.122 Water bridges: D:L.110, D:S.120, C:R.124, C:R.124 Salt bridges: C:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iino, H. et al., Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8. To be Published

Release Date

2007-11-13

Peptides

Universal stress protein family: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Universal stress protein family

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