SMTL ID : 2z2t.1

Crystal structure of the complex between gp41 fragment N36 and fusion inhibitor SC34EK

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-3-3-mer

Ligands

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 1 residues within 4Å: Chain C: R.35 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.35, C:R.35 Salt bridges: C:R.35

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain E: X.1, W.2, L.3, E.4 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishikawa, H. et al., Intrahelical Salt-bridges in a-Helical Peptide Enhances its Binding to the Target: A New Design for HIV-1 Fusion Inhibitors. To be Published

Release Date

2008-06-03

Peptides

gp41 fragment N36: ABC
Fusion inhibitor peptide SC34EK: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

gp41 fragment N36

Fusion inhibitor peptide SC34EK

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