- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GLC- MAN- GAL: beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose
- 3 x RET: RETINAL(Covalent)
RET.2: 14 residues within 4Å:- Chain A: Y.88, W.91, T.95, M.123, W.143, S.146, T.147, F.150, W.187, Y.190, P.191, W.194, D.217, K.221
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:Y.88, A:T.95, A:F.150, A:F.150, A:W.187, A:W.187, A:Y.190, A:Y.190, A:Y.190, A:Y.190, A:P.191, A:W.194, A:K.221
RET.6: 14 residues within 4Å:- Chain B: Y.88, W.91, T.95, M.123, W.143, S.146, T.147, F.150, W.187, Y.190, P.191, W.194, D.217, K.221
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:Y.88, B:T.95, B:F.150, B:F.150, B:W.187, B:W.187, B:Y.190, B:Y.190, B:Y.190, B:Y.190, B:P.191, B:W.194, B:K.221
RET.10: 14 residues within 4Å:- Chain C: Y.88, W.91, T.95, M.123, W.143, S.146, T.147, F.150, W.187, Y.190, P.191, W.194, D.217, K.221
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:Y.88, C:T.95, C:F.150, C:F.150, C:W.187, C:W.187, C:Y.190, C:Y.190, C:Y.190, C:Y.190, C:P.191, C:W.194, C:K.221
- 3 x 22B: BACTERIORUBERIN(Non-covalent)
22B.3: 21 residues within 4Å:- Chain A: V.111, T.112, T.115, V.119, L.137, T.141, F.145, Y.156, S.160
- Chain B: L.6, L.7, L.25, T.28, F.29, I.32, G.35, W.36, R.44, A.48, I.51, G.55
18 PLIP interactions:11 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:V.111, A:T.115, A:V.119, A:L.137, A:T.141, A:F.145, A:F.145, A:F.145, A:Y.156, B:T.28, B:I.32, B:A.48, B:I.51
- Hydrogen bonds: A:S.160, A:S.160, B:L.6, B:R.44
- Water bridges: B:R.44
22B.7: 21 residues within 4Å:- Chain B: V.111, T.112, T.115, V.119, L.137, T.141, F.145, Y.156, S.160
- Chain C: L.6, L.7, L.25, T.28, F.29, I.32, G.35, W.36, R.44, A.48, I.51, G.55
18 PLIP interactions:7 interactions with chain C, 11 interactions with chain B- Hydrophobic interactions: C:T.28, C:I.32, C:A.48, C:I.51, B:V.111, B:T.115, B:V.119, B:L.137, B:T.141, B:F.145, B:F.145, B:F.145, B:Y.156
- Hydrogen bonds: C:L.6, C:R.44, B:S.160, B:S.160
- Water bridges: C:R.44
22B.11: 21 residues within 4Å:- Chain A: L.6, L.7, L.25, T.28, F.29, I.32, G.35, W.36, R.44, A.48, I.51, G.55
- Chain C: V.111, T.112, T.115, V.119, L.137, T.141, F.145, Y.156, S.160
18 PLIP interactions:11 interactions with chain C, 7 interactions with chain A- Hydrophobic interactions: C:V.111, C:T.115, C:V.119, C:L.137, C:T.141, C:F.145, C:F.145, C:F.145, C:Y.156, A:T.28, A:I.32, A:A.48, A:I.51
- Hydrogen bonds: C:S.160, C:S.160, A:L.6, A:R.44
- Water bridges: A:R.44
- 3 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
L2P.4: 20 residues within 4Å:- Chain A: L.52, I.56, I.68, Y.85, A.89, F.93, L.97
- Chain B: L.92, V.125
- Chain C: T.71, Y.85, G.118, L.122, V.125, L.128, I.129, L.132
- Ligands: GLC-MAN-GAL.1, L2P.8, L2P.12
16 PLIP interactions:9 interactions with chain A, 2 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: A:L.52, A:I.56, A:Y.85, A:A.89, A:F.93, A:F.93, A:F.93, A:L.97, B:L.92, B:V.125, C:Y.85, C:Y.85, C:L.122, C:V.125, C:V.125
- Hydrogen bonds: A:Y.85
L2P.8: 20 residues within 4Å:- Chain A: T.71, Y.85, G.118, L.122, V.125, L.128, I.129, L.132
- Chain B: L.52, I.56, I.68, Y.85, A.89, F.93, L.97
- Chain C: L.92, V.125
- Ligands: L2P.4, GLC-MAN-GAL.5, L2P.12
16 PLIP interactions:2 interactions with chain C, 9 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: C:L.92, C:V.125, B:L.52, B:I.56, B:Y.85, B:A.89, B:F.93, B:F.93, B:F.93, B:L.97, A:Y.85, A:Y.85, A:L.122, A:V.125, A:V.125
- Hydrogen bonds: B:Y.85
L2P.12: 20 residues within 4Å:- Chain A: L.92, V.125
- Chain B: T.71, Y.85, G.118, L.122, V.125, L.128, I.129, L.132
- Chain C: L.52, I.56, I.68, Y.85, A.89, F.93, L.97
- Ligands: L2P.4, L2P.8, GLC-MAN-GAL.9
16 PLIP interactions:9 interactions with chain C, 5 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: C:L.52, C:I.56, C:Y.85, C:A.89, C:F.93, C:F.93, C:F.93, C:L.97, B:Y.85, B:Y.85, B:L.122, B:V.125, B:V.125, A:L.92, A:V.125
- Hydrogen bonds: C:Y.85
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshimura, K. et al., Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2. J.Mol.Biol. (2008)
- Release Date
- 2008-01-01
- Peptides
- Archaerhodopsin-2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GLC- MAN- GAL: beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose
- 3 x RET: RETINAL(Covalent)
- 3 x 22B: BACTERIORUBERIN(Non-covalent)
- 3 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshimura, K. et al., Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2. J.Mol.Biol. (2008)
- Release Date
- 2008-01-01
- Peptides
- Archaerhodopsin-2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A - Membrane
-
We predict this structure to be a membrane protein.