- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 3 x 22B: BACTERIORUBERIN(Non-covalent)
22B.2: 21 residues within 4Å:- Chain A: V.111, T.112, T.115, V.119, L.122, L.137, T.141, L.144, F.145, Y.156
- Chain C: L.6, L.25, T.28, F.29, I.32, G.35, R.44, A.48, I.51, L.52, G.55
16 PLIP interactions:10 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:V.111, A:T.115, A:V.119, A:L.122, A:L.137, A:T.141, A:L.144, A:F.145, A:Y.156, C:T.28, C:F.29, C:I.32, C:I.51, C:L.52
- Hydrogen bonds: A:Y.156, C:R.44
22B.5: 21 residues within 4Å:- Chain A: L.6, L.25, T.28, F.29, I.32, G.35, R.44, A.48, I.51, L.52, G.55
- Chain B: V.111, T.112, T.115, V.119, L.122, L.137, T.141, L.144, F.145, Y.156
16 PLIP interactions:10 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:V.111, B:T.115, B:V.119, B:L.122, B:L.137, B:T.141, B:L.144, B:F.145, B:Y.156, A:T.28, A:F.29, A:I.32, A:I.51, A:L.52
- Hydrogen bonds: B:Y.156, A:R.44
22B.8: 21 residues within 4Å:- Chain B: L.6, L.25, T.28, F.29, I.32, G.35, R.44, A.48, I.51, L.52, G.55
- Chain C: V.111, T.112, T.115, V.119, L.122, L.137, T.141, L.144, F.145, Y.156
16 PLIP interactions:6 interactions with chain B, 10 interactions with chain C- Hydrophobic interactions: B:T.28, B:F.29, B:I.32, B:I.51, B:L.52, C:V.111, C:T.115, C:V.119, C:L.122, C:L.137, C:T.141, C:L.144, C:F.145, C:Y.156
- Hydrogen bonds: B:R.44, C:Y.156
- 3 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
L2P.3: 18 residues within 4Å:- Chain A: I.56, I.68, Y.85, A.89, F.93, L.97
- Chain B: T.71, Y.85, A.89, F.93, G.118, L.122, V.125, I.129, L.132
- Chain C: L.92
- Ligands: L2P.6, L2P.9
15 PLIP interactions:8 interactions with chain B, 5 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: B:T.71, B:Y.85, B:Y.85, B:A.89, B:F.93, B:L.122, B:V.125, B:V.125, A:I.68, A:Y.85, A:F.93, A:L.97, C:L.92, C:L.92
- Hydrogen bonds: A:Y.85
L2P.6: 18 residues within 4Å:- Chain A: L.92
- Chain B: I.56, I.68, Y.85, A.89, F.93, L.97
- Chain C: T.71, Y.85, A.89, F.93, G.118, L.122, V.125, I.129, L.132
- Ligands: L2P.3, L2P.9
15 PLIP interactions:5 interactions with chain B, 8 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: B:I.68, B:Y.85, B:F.93, B:L.97, C:T.71, C:Y.85, C:Y.85, C:A.89, C:F.93, C:L.122, C:V.125, C:V.125, A:L.92, A:L.92
- Hydrogen bonds: B:Y.85
L2P.9: 18 residues within 4Å:- Chain A: T.71, Y.85, A.89, F.93, G.118, L.122, V.125, I.129, L.132
- Chain B: L.92
- Chain C: I.56, I.68, Y.85, A.89, F.93, L.97
- Ligands: L2P.3, L2P.6
15 PLIP interactions:8 interactions with chain A, 5 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: A:T.71, A:Y.85, A:Y.85, A:A.89, A:F.93, A:L.122, A:V.125, A:V.125, C:I.68, C:Y.85, C:F.93, C:L.97, B:L.92, B:L.92
- Hydrogen bonds: C:Y.85
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshimura, K. et al., Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2. J.Mol.Biol. (2008)
- Release Date
- 2008-01-01
- Peptides
- Archaerhodopsin-2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
EC
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 3 x 22B: BACTERIORUBERIN(Non-covalent)
- 3 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshimura, K. et al., Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2. J.Mol.Biol. (2008)
- Release Date
- 2008-01-01
- Peptides
- Archaerhodopsin-2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
EC
E - Membrane
-
We predict this structure to be a membrane protein.