SMTL ID : 2z62.1

Crystal structure of the TV3 hybrid of human TLR4 and hagfish VLRB.61

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUL.1: 5 residues within 4Å: Chain A: G.121, H.122, K.124, Y.144, N.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.122, A:K.124

1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.2: 5 residues within 4Å: Chain A: E.5, N.9, Y.12, P.27, S.29 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.5, A:N.9, A:N.9, A:Y.12

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 4 residues within 4Å: Chain A: E.152, N.179, R.201, K.203 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.M. et al., Crystal Structure of the TLR4-MD-2 Complex with Bound Endotoxin Antagonist Eritoran. Cell(Cambridge,Mass.) (2007)

Release Date

2007-09-18

Peptides

Toll-like receptor 4, Variable lymphocyte receptor B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toll-like receptor 4, Variable lymphocyte receptor B

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