SMTL ID : 2z79.2 (1 other biounit)

High resolution crystal structure of a glycoside hydrolase family 11 xylanase of Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.65, Y.80, R.112, Q.127, W.129 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.65, A:R.112, A:Q.127 Water bridges: A:Y.65 GOL.2: 10 residues within 4Å: Chain A: W.9, V.37, Y.69, E.78, Y.80, R.112, Q.127, Y.174 Ligands: GOL.1, GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.78, A:Y.80, A:Q.127, A:Y.174 Water bridges: A:R.112 GOL.3: 6 residues within 4Å: Chain A: Q.7, W.9, Y.69, S.117, Y.166 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.7, A:Y.69, A:P.116, A:Y.166 GOL.4: 6 residues within 4Å: Chain A: T.3, D.4, Y.5, N.20, G.23, K.40 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.3, A:Y.5, A:N.20, A:G.23, A:K.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vandermarliere, E. et al., Crystallographic analysis shows substrate binding at the -3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-beta-xylanases. Biochem.J. (2008)

Release Date

2007-12-11

Peptides

Endo-1,4-beta-xylanase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endo-1,4-beta-xylanase A

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